Another reason could be that he witnesses corruption or unfairness within the village leadership. If he sees that the system is rigged against certain groups, including himself or his friends, he could grow to hate Konoha and decide to leave.
One possible reason could be to seek stronger opponents outside of Konoha. Naruto might feel that he has outgrown the training opportunities in the village and wants to face greater challenges.
Maybe there are some dark secrets within Konoha that he discovers in the fanfic. These secrets could be related to the treatment of certain individuals or something more sinister about the village's leadership. Discovering such things could make Naruto decide to leave in order to distance himself from the corruption or unfairness.
Konoha would initially be in shock. Naruto is a hero to many in the village, and his sudden departure with Itachi, who was once considered a traitor, would cause a lot of unrest. The villagers might start to question the leadership of the village, wondering why Naruto left and if there was something they could have done to prevent it.
One possible reason could be for Naruto's safety. Maybe she has to go on a dangerous mission and believes Konoha is the safest place for him. Another reason might be that she is forced by some powerful enemies who threaten Naruto's life if she doesn't leave him in Konoha.
Well, perhaps Naruto could be framed for a crime in Konoha and then be forced to leave as an assassin. He might start working for an enemy village at first, but then gradually realizes that there's a deeper conspiracy behind his framing. So he decides to clear his name and also protect Konoha in the end.
In a 'naruto and kushina leaves konoha fanfic', perhaps they leave due to a threat to Naruto's safety that the village can't fully protect against. Maybe some secret organization is after him and they feel they have no choice but to go into hiding outside Konoha.
Perhaps they are forced to leave due to false accusations or being framed for something they didn't do. This could create a situation where they feel they have no choice but to leave Konoha in order to clear their names and also protect the village from the real threats that might be lurking in the shadows.
Well, it could be that Naruto, with his godlike powers, leaves Konoha because he feels misunderstood. Maybe the villagers still fear his power despite all he has done for them.
In a 'Naruto Namikaze leaves Konoha' fanfic, it could be that Naruto is framed for a crime he didn't commit. The villagers turn against him, and even his friends start to doubt him. Feeling betrayed and alone, he decides to leave Konoha. As he travels, he meets other outcasts who have also been wrongly accused, and together they form a group to clear their names and seek justice.