It could be a new player on the team who is jealous of Harry's skills and popularity. This new player might spread lies about Harry, turning the other team members against him. So the new player would be the main antagonist in this scenario.
The main antagonist could also be an outside force, like a Quidditch coach from another team who wants to weaken Harry's team. He bribes or blackmails some members of Harry's team to betray him. This way, the coach from the other team is the real driving force behind the betrayal, even though it's the teammates who actually carry it out.
It could be a jealous teammate who feels that Harry is getting all the attention and glory. This teammate might try to sabotage Harry during practices or matches.
Perhaps in the fanfiction, the Quidditch team gets influenced by a dark wizard who has a grudge against Harry. The wizard uses a spell to make the team members believe Harry is a threat to them. So they start to betray him by not passing the Quaffle to him during the game, or even colliding with him on purpose during a fly - around. This would lead to Harry feeling extremely isolated and confused as he thought his team was like family.
If Harry's parents are the ones who betrayed him, they could be considered the main antagonists in a sense. They created this false image of themselves as loving parents when in fact they had ulterior motives. Another possibility could be a character who was in on the parents' plan and now is trying to cover it up or continue the malicious work they started. Maybe it's an old acquaintance of his parents from their days at Hogwarts who is now out to stop Harry from finding out the truth.
The Ministry of Magic itself could be the main antagonist. They might be so afraid of Harry's growing power and influence that they create false evidence to make everyone believe he has betrayed the wizarding world. They try to control the situation by turning everyone against Harry.
Perhaps an old enemy who has infiltrated Gryffindor in disguise. They use their influence to make the Gryffindors believe that Harry is a danger. They could be a Death Eater or a follower of Voldemort who has found a way to get into Gryffindor and manipulate the students' minds, causing them to betray Harry.
Another possibility is that there is no single main antagonist. It could be a combination of misunderstandings, village politics, and personal issues within Kurenai herself that lead to her betraying Naruto. For instance, the village elders might be pressuring Kurenai to keep Naruto in check, and at the same time, Kurenai has her own doubts about Naruto's power which could be misconstrued as a reason to betray him.
It could be one of the harem members who has a hidden dark side. Maybe she's jealous of Naruto's closeness to others in the harem and decides to turn the rest against him, so she becomes the main antagonist.
Maybe it's a new character created specifically for the fanfiction. This character could be a powerful sorcerer who has the ability to manipulate people's minds. He targets Goku out of jealousy for his power and popularity. By using his mind - control powers, he makes everyone around Goku believe that he's a traitor, thus making himself the main antagonist.
It could be a new character introduced in the fanfiction. Maybe someone who has infiltrated the Order and wants to create chaos by turning them against Hermione. This person could be a spy from the Death Eaters or another dark - aligned group, with the goal of weakening the Order from within by making them lose one of their most intelligent and powerful members.
He might meet other Hogwarts students who he doesn't know very well. They could become good friends through their shared love of Quidditch.