In a 'naruto meets his counterpart fanfic', a plot twist could be that the counterpart seems friendly at first but is secretly working for an enemy. Or perhaps the counterpart is a clone created by an old enemy of Naruto's with a different set of memories. It could also be that the counterpart has a connection to a long - lost part of Naruto's family that he didn't know about, which changes everything he thought he knew about his own identity.
In such a fanfic, Naruto might initially be confused when he meets his counterpart. They could compare their lives, skills, and experiences. Maybe they would have a friendly spar to test each other's strength.
One interesting plot twist could be that the alternate Naruto is from a parallel universe where the roles of good and evil are reversed. This would force the real Naruto to question his own beliefs and values. And it might also lead to a battle between the two Narutos, not just a friendly encounter, as they fight over what is right and wrong.
In the 'naruto meets nagato fanfiction', a plot twist might be that Nagato fakes his change of heart at first. He could be playing a long - game to deceive Naruto and the Leaf Village. Or perhaps, there is a prophecy that involves both of them, but it has been misinterpreted all along. And when they meet, they start to uncover the real meaning of the prophecy, which changes everything they thought they knew about their fates and the future of the ninja world.
One possible plot twist could be that Bowsette turns out to have some sort of connection to Naruto's world that he never expected. Maybe she has a hidden kekkei genkai - like ability that is related to Naruto's ninja powers.
One possible plot development is that Naruto's dad helps him unlock new powers. Maybe he shows Naruto a secret Uzumaki technique.
A plot twist could be that Naruto discovers a long - lost connection between the Nine - Tails and some ancient power in Kumo. This could change the whole dynamic of his capture situation. Instead of being a victim, he might become an important figure in Kumo's internal power struggle. And this new - found connection could also lead to a new alliance between Konoha and Kumo in the end. Another twist could be that Naruto's capture was a ruse by Konoha's higher - ups to gain some secret knowledge in Kumo. Naruto was sent there on purpose, but things start to go wrong when Kumo figures out the plan.
One possible plot twist could be that Naruto's closest friend turns out to be secretly working for the enemy. Just when Naruto is about to make a final stand against the invaders, his friend betrays him, leaving him in a difficult situation. But Naruto, being Naruto, manages to find a way to turn the situation around and still save the village.
One possible plot twist could be that Naruto discovers a way to nullify Jigen's power. Maybe he finds a weakness in the power source that Jigen draws from. Another twist could be that Jigen is actually being controlled by a greater evil, and Naruto has to figure out a way to free him rather than just defeat him. It could also be that Naruto loses his powers temporarily during the fight and has to rely on his wits and the help of his friends in unexpected ways.
One possible plot line is that Naruto is injured badly and Tsunade has to use her medical skills to save him. During his recovery, they have deep conversations about life, dreams, and the future of the village. Another could be that Tsunade decides to train Naruto in a special jutsu that only she knows, which would enhance Naruto's abilities greatly.
A plot twist might be that Jotaro loses his Stand abilities temporarily and McCree has to protect him. Or perhaps they find out that there's a traitor among the people they thought were their allies in this fanfiction world. This would force them to re - evaluate their situation and who they can trust. Also, it could be that a powerful artifact they were supposed to protect actually has the power to control them, and they have to fight against its influence.