Perhaps Harry, as Naruto's sister, has to deal with the discrimination that Naruto faces, but in a different way due to her magical abilities. She could use her magic to protect Naruto from some of the more dangerous villagers who might want to harm him. Also, she could be involved in the search for Sasuke, using her magic to track him in ways that the ninjas in the village can't. For instance, she might be able to use a spell to detect his unique chakra signature from a long distance.
One idea could be that Harry, as Naruto's sister, discovers she has a unique form of magic that combines with Naruto's chakra. For example, she might be able to use her magic to enhance Naruto's shadow clone jutsu, making the clones more powerful and capable of different tasks. Another plot point could be that she tries to introduce the concept of Hogwarts and the wizarding world to the Hidden Leaf Village, which causes a stir as the villagers try to understand this new and strange form of power.
A possible plot could be that Harry's presence as Naruto's sister attracts the attention of other ninja villages. Some might see her as a threat because of her unknown powers, while others might try to recruit her. This could lead to a series of battles and political intrigue. Meanwhile, Harry is also trying to learn about her new family and the ninja way, while also teaching Naruto some basic magic spells that could be useful in combat situations.
One idea could be Naruto fully embracing the Kyuubi's power and using it in unique ways. For example, he might be able to transform into a new, more powerful form that combines his own skills with the raw power of the Kyuubi. He could also use the Kyuubi's chakra to perform new jutsus that are previously unthinkable. Another plot idea is that Naruto starts to think and act more like the Kyuubi in some aspects, which causes conflict among his friends and allies as they try to figure out if he's still the same Naruto they know.
A possible plot is that Naruto accidentally drinks a magic potion created by an eccentric inventor. This potion makes him handsome but also gives him some strange powers related to charm. He has to learn to control these new powers while dealing with the attention he gets from everyone, including some unwanted attention from villains who want to use his new charm for their own evil purposes. In the end, he figures out how to reverse the potion but decides to keep some of the confidence his new looks gave him.
One plot idea could be Naruto facing an extremely difficult mission during the Chunin Exams that tests not only his combat skills but also his strategic thinking. For example, he might have to rescue hostages in a complex maze-like fortress while being outnumbered by enemy ninja. Another idea is that Naruto discovers a new and unique jutsu during his training for the Chunin rank, which gives him an edge in the exams but also draws unwanted attention from other villages. Maybe he could form an unexpected alliance with a rival ninja during the exams to overcome a common enemy.
One idea could be that Naruto has to go through a series of ancient trials in a hidden and dangerous realm to become a sage. He might face illusions of his past failures and have to overcome them. Another could be that he has to learn from a reclusive and cranky old sage who initially doesn't trust him but Naruto wins him over with his determination. And a third could be that Naruto discovers a new form of chakra related to sage mode that he has to master while also fending off enemies who want to steal this power for themselves.
One idea could be that Naruto becomes undead and has to deal with the fact that he's no longer fully human. He might struggle with his new identity and how his friends will react. For example, Sasuke could be initially suspicious and conflicted about this new Naruto.
Well, a plot could involve Kisame's sister being a healer. Naruto gets seriously injured in a battle and she is the only one who can save him. As she heals him, they start to share their stories and dreams. This leads to her realizing that the Akatsuki's ways might not be right. Also, she could be in a love triangle between Naruto and a member of the Akatsuki, which would add a lot of drama to the story. There could also be a plot where she discovers a prophecy that Naruto is the key to saving the ninja world, and she decides to protect him at all costs.
Well, it could be that Fem Harry Potter has been hidden in the wizarding world all this time, not knowing about her true family in the Naruto universe. One day, a mysterious figure reveals the truth to her. She then decides to journey to find Naruto. Along the way, she encounters various challenges. In the Naruto world, she discovers that her sisterly bond with Naruto gives them a special power when they fight together. They have to fight against an evil force that wants to destroy both the wizarding world and the ninja world, and their combined strength is the key to victory.
One idea could be Naruto facing unexpected challenges right before his coronation as Hokage. Maybe a new enemy emerges that questions his worthiness, leading to a final battle where he has to prove himself not just as a powerful ninja, but also as a true leader. Another plot could involve Naruto dealing with internal village politics. As he is about to become Hokage, different clans start vying for more power and influence, and Naruto has to balance their demands while still maintaining the unity of the village.
One plot idea could be that Harry discovers his Slytherin side is linked to a long - lost ancestor who was a great Slytherin wizard. This makes him question his identity and loyalty. Another could be that in Slytherin, he has to deal with the prejudice from the rest of the Hogwarts houses at first, but gradually changes their minds through his unique charm and skills.
Perhaps Harry's sister was kidnapped as a baby and raised by Death Eaters. She grows up believing in their cause until she discovers the truth about her family. This creates an internal struggle for her. She has to break free from the indoctrination and find a way to reconnect with Harry and the good side. Along the way, she might use the dark magic she was taught in a new and unexpected way to defeat Voldemort, like using a curse against him that he never expected because it was one of his own teachings.