A really interesting 'Doctor X Tardis' fanfic I've come across is 'Tardis Tales'. In this fanfic, the Tardis has a sort of consciousness that the Doctor tries to fully understand. It delves into the mystery of the Tardis' inner workings and how it has a connection to the Doctor on a deeper level than just being a ship. It's a short but engaging read that will make you look at the Doctor - Tardis relationship in a new light.
Often, it involves exploring the unique bond and adventures between the human Tardis and the Doctor. There's a focus on how this unconventional setup changes their dynamic and the challenges they face together.
Good character development in both the Doctor and the Tardis is key. If a fanfic delves into the Doctor's past experiences with the Tardis and how it has shaped him, and at the same time shows the Tardis evolving in some way, it's bound to be great. For instance, the Tardis could develop new functions based on the Doctor's needs over time. Also, a vivid description of the Tardis' interior and how it feels to be inside it can really make a fanfic stand out.
Well, they might end up in a completely unexpected time or place. Maybe a planet full of strange creatures that they've never encountered before. It could be a really wild adventure.
Obviously, Clara and the TARDIS are the main characters. Clara, with her inquisitive nature and strong will, and the TARDIS, the sentient time - space ship with its own mysteries.