Well, in some fanfictions, Naruto might outsmart Konoha by using his unique knowledge of the village's secrets that others don't know. For example, he could use his understanding of the old tunnels under Konoha to his advantage in a situation where he needs to escape or gain an upper hand in a conflict.
One key plot point could be Naruto discovering a conspiracy within Konoha. He then uses his wits to gather evidence without being detected. Another might be when he outmaneuvers the village elders in a political situation, perhaps by using the support of the younger generation.
He might use his influence as a hero. Naruto has a lot of friends and supporters in the village. By getting them to see his point of view about the council's inefficiencies or wrongdoings, he could start a movement to oust the council. For example, he could talk to his old friends like Shikamaru, who is intelligent and might be able to come up with a strategic plan.
One possible reason could be that the council often restricts Naruto's actions. They might see him as a potential threat or a wild card due to his Nine - Tails power. So, Naruto, being a free - spirited person, would naturally hate being controlled by them.
Naruto could also show his hatred through his actions. Maybe he refuses to cooperate with any mission or task that is directly related to the council's orders. He would rather do things his own way or follow the orders of someone he trusts more, like Kakashi or Iruka.
On the positive side, new and better policies could be implemented. If the old council was corrupt or stagnant, getting rid of them would open the door for fresh ideas and reforms. Naruto could bring in new people with different perspectives to help run the village, leading to a more prosperous and fair Konoha.
In some fanfiction scenarios where Naruto kills the civilian council, it might be seen as a reaction to years of mistreatment and oppression. The civilian council in the Naruto universe has often been shown to be short - sighted and discriminatory towards Naruto. However, from a moral standpoint in the real world, killing is never an easy solution. But in the context of a fictional and often corrupt world of Naruto fanfiction, it could be a way to show Naruto breaking free from the chains that have held him back for so long.
In some fanfictions, Naruto might use his unexpected knowledge. For example, he could have learned about some ancient ninja tactics that the council overlooked. He then uses this knowledge to solve a problem or make a plan that the council couldn't come up with, thus outsmarting them.
Well, in this kind of fanfiction, Naruto might snap at the council because he's tired of their unfair treatment. Maybe they keep underestimating him or trying to control his actions. For example, they could be restricting his ninja training or missions in a way that he finds unjust.
One reason could be that they want to enlist Naruto's help for a particular mission. Since he has unique abilities as a jinchuriki and has proven himself in many battles, they may think he's the best person for the job. Also, they might call him to clarify some misunderstandings. There could be rumors or false information about Naruto circulating in the village, and the council wants to get the truth from him directly.