One possible plot could be that the Avengers are somehow transported to the Naruto universe. They team up with Naruto and his friends to fight a common enemy like Kaguya who has somehow obtained the Infinity Stones. The Avengers' powers and technology would be a huge shock to the Naruto world, and they'd have to learn to combine their skills to succeed.
One common theme is the clash of different cultures. Naruto comes from a world of ninjas with its own values and traditions, while the Avengers are from a more modern, superhero - filled world. Another theme could be power comparison. Since Naruto is godlike in these fanfics, it's interesting to see how his powers stack up against the Avengers' abilities.
One possible plot could be that Naruto is somehow transported to the Marvel universe. The Avengers initially mistake him for a threat. But Naruto, being Naruto, tries to explain his situation. He then shows them his ninja skills like shadow clones and Rasengan. Together, they could face a common enemy like Thanos, who has acquired some sort of ninja - like powers. Naruto's ability to never give up and his strong will could inspire the Avengers, and his combat skills could be a great addition to their team in the fight.
An interesting crossover could be that the Infinity Stones are actually ancient ninja artifacts lost in another dimension. Naruto and his friends are sent to the Marvel universe to retrieve them. Along the way, they meet the Avengers and team up. They have to learn to use each other's powers and fight off Thanos who wants the stones for his own evil purposes.
Well, a great plot could be that the Infinity Stones start to mess with the fabric of reality and it creates a portal between the Naruto universe and the Marvel universe. The Avengers and Naruto's friends end up in each other's worlds. Naruto and the Avengers have to work together to fix the portals and return everyone to their proper universes. Along the way, Naruto might have some epic battles with villains like Loki, using his ninja speed and strength. And the Avengers could learn a thing or two about chakra from Naruto and his friends.
Sure. There are many such fanfics on various fanfic websites. You can try Archive of Our Own (AO3). Just search for 'godlike naruto and avengers crossover' there, and you'll likely find a bunch of interesting stories written by fans from all over the world.
Maybe in the fanfic, Batman's rogues gallery somehow teams up with some of the Avengers' villains. This forces Batman and the Avengers to work together. Batman could introduce his unique gadgets and combat style to the Avengers, while they could show him their superpowers up close. For example, Iron Man could be intrigued by Batman's utility belt and try to create his own version of some of the gadgets.
A good plot could involve a villain from the Homestuck universe creating chaos in the Avengers' world. The Homestuck characters come to help, but there are misunderstandings at first between them and the Avengers. However, as they start to understand each other's powers and motives, they form a strong alliance to defeat the villain.
Definitely Naruto and Hulk. Just imagine Naruto trying to calm down the Hulk when he's angry. It would be hilarious. And on a more serious note, Naruto's positive energy might have an effect on the Hulk. Also, Sakura and Captain America. Sakura is a strong - willed and powerful female character, and Captain America is a symbol of leadership and justice. They could bond over their shared values and exchange fighting strategies.
Hawkeye and Sasuke would make a cool pairing. They are both very skilled in ranged combat. Hawkeye could learn some of Sasuke's Sharingan - enhanced archery skills, and Sasuke could be interested in Hawkeye's high - tech arrows. Also, Iron Man and Kakashi would be an interesting match. Iron Man's love for technology and Kakashi's use of Sharingan - based tech like his Ninja Hound summons could lead to some great interactions. They could even collaborate on creating new gadgets for both universes.