Another reason might be that Naruto is seeking a greater purpose. In the fanfiction, his 'godlike' state could make him realize that there are threats out there that he can't face while being tied to Konoha. He may leave to protect the world on a larger scale, believing that he can be more effective away from the village.
They could leave because of a prophecy. Some ancient prophecy might state that they need to leave Konoha to fulfill a greater destiny elsewhere. So they trust in this prophecy and leave their home.
Maybe they leave to find a better way to protect Konoha. They might think that by exploring the outside world, they can gain new knowledge and powers that will be useful for their village in the long run.
It would be a huge blow to Konoha. Naruto is a hero in the village, and his departure would leave a big leadership void. The villagers would also lose a great source of inspiration. Hinata is from a respected clan, and her leaving would also have an impact on the clan's standing in the village. Morale among the ninjas might drop as they see two important figures leave.
Well, it would be a big loss for Konoha. Naruto is a powerful ninja, and his absence would mean one less strong fighter to defend the village. Ino, too, has her unique skills in mind - related jutsu and communication. Their departure might also lower the morale of other ninja, especially those who were friends with them or looked up to them.
One reason could be to seek greater power. Maybe they feel that Konoha no longer offers the training or resources they need to reach their full potential. So they decide to leave and explore other places where they can become stronger.
One possible reason could be to seek a new life away from the politics and pressures of Konoha. Maybe they feel restricted by the village's rules and expectations. Another reason might be for a personal adventure. They could be in search of something that Konoha can't offer, like a new type of ninja training or a mysterious power source. Also, it could be related to protecting their family. If they sense some kind of threat to their family within Konoha, they might choose to leave to keep them safe.
They could go to the Land of Fire's outskirts, where there are less - known ninja clans. Naruto might hope to learn from them and Anko could be interested in the unique fighting styles these clans possess.
Perhaps in a fanfiction, Sasuke discovers a new and extremely dangerous power that he can't control and it starts to endanger Konoha. Naruto tries to stop him but in the heat of the battle, accidentally kills him. Overwhelmed with guilt and feeling that the village will never understand, Naruto leaves. But this is a very different take on their relationship and the Naruto world as a whole.
One reason could be a special mission. For example, there might be a threat that only Naruto can help with in Suna. Maybe there's a new type of enemy that has some connection to Suna's unique chakra sources and Naruto's abilities are needed to figure it out.