In this fanfiction, the plot might involve the gods using their divine powers to take away Naruto's abilities. They could do this because they fear that Naruto's power could disrupt the natural order they have established. Without his powers, Naruto is vulnerable and betrayed. He has to find a way to regain his abilities and prove his innocence to those who once believed in him.
One possible plot could be that the gods, seeing Naruto's growing power as a threat, decide to turn the world against him. They might manipulate events to make it seem like Naruto has committed unforgivable crimes. For example, they could cause false memories in people's minds. Naruto would then have to fight not only against the physical enemies but also against the false accusations and the loss of trust from his friends.
Well, it could be that Naruto discovers the gods have been using him all along for some dark purpose, like to start a war between different ninja clans. Maybe they promised him power in the beginning but then turned on him when he started to question their motives.
Maybe the gods are jealous of Naruto's ability to inspire people. In this fanfic, they could use their divine powers to make it seem like Naruto has committed heinous crimes. His village would turn on him, and he'd be on the run. Along the way, he might discover some ancient power that can counter the gods' treachery and use it to clear his name and get revenge on those who wronged him.
Another possibility is that there is a false god or a demon that has influenced the true gods to betray Naruto. This false entity could be the real mastermind behind the whole situation. It wants to use Naruto's downfall to gain more power or to bring chaos to the ninja world. So Naruto not only has to deal with the betrayed by the gods part but also has to uncover the true source of this conspiracy which is this false god or demon.
In this fanfiction, it might be that Sirzechs is being manipulated by some dark force. This dark force convinces Sirzechs that Naruto is evil. As a result, Sirzechs betrays Naruto. Naruto then has to not only deal with the betrayal but also figure out how to stop this dark force that is causing so much chaos and misunderstanding.
Perhaps in this fanfiction, Yugao is secretly working for a hidden organization that wants to get rid of Naruto. She betrays him by revealing his secrets or setting him up in dangerous situations. Naruto, being the kind - hearted person he is, initially doesn't want to believe she would do such a thing and tries to reason with her, but she is too far gone in her loyalty to the other side.
In this fanfiction, perhaps there's a power struggle. Naruto, being a powerful ninja, could be seen as a threat to the RWBY world's power balance. So, the RWBY characters, out of fear or a sense of self - preservation, betray him. They might think he'll disrupt their way of life or take over their territory.
One possible plot could be that Jiraiya is forced to betray Naruto due to some external threat. Maybe an enemy has captured Jiraiya's loved ones and threatened to kill them if he doesn't turn on Naruto. Jiraiya, in a difficult position, might have to pretend to be against Naruto to protect his loved ones while secretly trying to find a way to free both Naruto and his family from the enemy's clutches.
Well, one possibility could be that Mavis has some sort of hidden agenda. Maybe she's being controlled by a greater evil force that makes her turn on Naruto. It could also be a misunderstanding. For example, false information is spread about Naruto, and Mavis believes it without proper investigation. Another idea is that Mavis has a different view of the ninja world compared to Naruto, and their conflicting ideologies lead to her betraying him.
Well, it could be that Kurenai is somehow deceived into believing Naruto has done something really bad. Maybe she's tricked by an enemy who fakes evidence against Naruto. So, in her misunderstanding, she turns against him.
In this fanfiction scenario, perhaps Mirajane has her own dark secrets or hidden motives that lead to her betraying Naruto. She might be seeking power and sees Naruto as an obstacle. Or, it could be related to loyalty to her own guild or group. If there are conflicting interests between Naruto's world and her world, she might choose to side against Naruto to protect her own people.