Another reason could be related to school work. If there are new rules in Hogwarts that she deems unfair regarding academics, like restrictions on library access or new grading systems that don't reward hard work properly. Hermione is all about learning and fairness in education, so this could really make her angry.
One reason could be Boruto's recklessness. In fanfiction, Boruto might engage in dangerous stunts or actions that go against Naruto's teachings. For example, if Boruto were to use a forbidden jutsu without fully understanding the consequences, Naruto would be angry as it not only endangers Boruto but also those around him.
In a fanfiction, Natsu might get angry if he was wrongly accused of something. Say, if he was blamed for a crime he didn't commit in the guild or in the magical world at large. He's an honest person, and being falsely accused would be a huge blow to his pride. Another possible reason is if a magic - based experiment went wrong because of someone else's carelessness and it put his friends in danger. Natsu values the safety of his comrades, and such a situation would make his blood boil. Also, if someone were to try and break up the Fairy Tail guild by causing internal disputes, Natsu would be enraged as he loves the unity and spirit of the guild.
One possible reason could be that Tsunade makes a decision regarding the village that Naruto strongly disagrees with. For example, if she refuses to send help to a neighboring village in need, Naruto, with his strong sense of justice, might get angry. He's always been about protecting and helping others.
One possible reason could be misrepresentation of her character. In some fanfictions, authors might change her personality to fit a certain plot, like making her overly jealous or mean, which would be out of character for the gentle Hinata. This could make her seem unlikable and thus anger fans who love the original Hinata.
One possible reason could be jealousy. Maybe Jackson has something Stiles wants, like popularity or a girl he likes. For example, if they both like Lydia, Stiles might get angry at Jackson's smooth ways with her.
A major reason could be differences in their approaches to fighting the dark forces. Maybe in the fanfic, Hermione wants to use a more diplomatic and academic approach, Ron is hesitant and just wants to follow the status quo, and Harry wants a more direct and action - based approach. Their inability to reconcile these differences can lead to Harry being angry. For example, when they are planning how to deal with a new dark wizard threat, their arguments and lack of compromise can make Harry frustrated and angry with them.
Well, perhaps in the fanfiction, the Order made decisions without consulting Harry. They might have put him in a dangerous situation without his knowledge, like sending him on a mission that seemed suicidal. It could also be that they were keeping secrets from him that he felt were important to his fight against Voldemort.
In fanfiction, Harry Potter might be angry if his friends are in danger and no one seems to be taking it seriously. He's very protective of his friends, like Ron and Hermione. So if some authority figures in the story are being dismissive of the threats his friends face, that would surely make him angry.
Perhaps the wizarding government or authorities were being unjust. For example, if they wrongly accused Harry of a crime he didn't commit, his sense of justice would be outraged. His anger would drive him to fight back and prove his innocence. He's not the type to let false accusations stand.
Another reason could be if someone were to slander or disrespect his late mentor, like Iruka or Jiraiya. Naruto holds these people in high regard, and any negative remarks or actions towards them would likely enrage him.