Perhaps in the fanfiction, Dark Naruto has been betrayed. It could be that someone he trusted deeply, like a mentor or a close friend, turned on him. This act of betrayal could make him lose faith in humanity and lead to his hatred for everyone. He might think that if one person can betray him, then anyone can, so he hates them all without distinction.
Maybe Naruto hates it because the two universes have very different power systems and cultures. Naruto's world is about ninjas, chakra, and village politics, while Avatar has bending elements and a different kind of spiritual connection. The fanfiction might misinterpret or blend these in a way that doesn't sit well with Naruto fans who are purists.
It could also be due to differences in values. If Dark Naruto had different beliefs about power, friendship, or loyalty compared to his family, and they constantly clashed over these, it might lead to his hatred. For instance, if his family adhered strictly to Konoha's traditional values but he saw them as restrictive.
Maybe he got some kind of curse. In the Naruto universe, there are all sorts of dark magic and curses. If he was cursed, it could make him withdrawn and cause him to ignore everyone.
One reason could be the way Hiruzen treated Naruto as a child. In the original, Naruto was kind of an outcast, and if in fanfiction, Naruto blames Hiruzen for not doing more to prevent that, he could hate him. Another reason might be related to Hiruzen's decisions regarding the Uchiha clan. If Naruto in fanfiction feels that Hiruzen's actions led to bad consequences for the village and his friends, he might develop hatred.
One reason might be that he doesn't like how fanfiction can change the relationships between characters. For example, in the original, his relationship with Naruto is based on training and mentorship, but fanfiction could make it something completely different.
One possible reason could be a powerful genjutsu cast over the village. Maybe an enemy ninja with strong illusionary powers managed to make everyone forget Naruto. It could also be due to some sort of curse. For example, a dark curse was placed on Naruto that made people's memories of him fade away gradually.
One possible reason could be that Naruto has seen or experienced something that makes him distrust or fear those around him. Maybe he has discovered a dark secret about the village or his friends that has shaken his beliefs.
It could also be that Naruto has had some sort of revelation about himself or the ninja world. He might have realized that the relationships he has been in were holding him back in some way. Maybe he wants to focus on self - improvement and growth, and he believes that being alone is the best way to do that. He could be trying to find his true self without the influence of others.
One possible reason could be a misunderstanding. Maybe some false information was spread about his mother, making Naruto believe she had abandoned him. Another reason could be related to the secrecy around his mother. If he grew up feeling alone and not knowing about her, he might develop resentment.
One reason could be that it's simply not his genre. Naruto is used to his own action - packed, ninja - themed story. Fallen angel fanfiction is likely to be more on the supernatural and spiritual side, which he may not be interested in.