A rival detective or agent might be behind it. Jealous of their success and relationship, this person wants to get them out of the picture so they can take over their cases and gain more glory. In fanfic, this kind of character rivalry can be a strong motivation for such actions.
It could be a vengeful criminal that they put behind bars. This person has escaped and wants to get back at them, so they engineer their disappearance. Maybe they have a whole elaborate plan to torture them in some remote location.
Maybe they stumble upon a government conspiracy. The government wants to keep something hidden and they are seen as a threat, so they are made to disappear. It could also be related to a scientific experiment gone wrong. They are in the wrong place at the wrong time and get caught in an energy field that transports them to an unknown location, causing them to disappear from their normal world.
One possible reason could be that they are on a secret mission. Maybe they are trying to protect a key witness or important evidence from a powerful and dangerous criminal organization. In the world of fanfic, this could lead to them having to disappear to keep their whereabouts unknown.
A Castle and Beckett baby fanfic could be about their journey into parenthood. It might explore how they adjust to having a baby in their lives. For example, Castle could be super excited and start writing new stories inspired by his new family experience, while Beckett might be a bit more cautious and protective.
Castle might become obsessed with finding the truth about what happened. His writer's mind would start formulating theories and he would stop at nothing to get justice for Beckett, which could put him in dangerous situations.
There could be. The Castle fandom is quite creative, and a pregnancy plot for Beckett is a popular trope in fanfiction. Some fanfics might focus on the romantic aspect of it, with Castle being over - the - moon and taking extra care of Beckett. Others might explore the more practical and challenging sides, such as Beckett still trying to solve cases while dealing with pregnancy symptoms.
He could become more withdrawn. Losing Beckett like that would make him hesitant to let people in again. He'd be more guarded, fearing another loss.
In a fanfic where they have a baby, their relationship would shift. They would now be partners not only in crime - solving but also in parenting. Castle would likely become more domesticated, helping with diaper changes and midnight feedings. Beckett would have to learn to let Castle in more on the parenting front, and they would communicate more about family - related matters. This new aspect of their relationship would add a different layer of complexity and closeness to their bond.
He could react with anger. After all, if he has feelings for Beckett, seeing her with someone else like Vaughn might make him furious. He might lash out at both Beckett and Vaughn without really understanding the situation.
The main characters would be Beckett and Castle, as the title implies. Beckett is likely to be the one taking some sort of action in relation to Castle.
He would likely feel extreme shock. Just the sight of her body could send his mind into a tailspin. He might also be in denial at first, not wanting to believe that it's really her.