One idea could be that as a girl, Ben has to face different social challenges while still using the Omnitrix to save the day. For example, some might underestimate her because of her gender, but she proves them wrong with her heroic deeds.
Another plot could be that Ben, now a girl, has to deal with a new villain who specifically targets her because of her gender. This villain might think she is weaker, but Ben uses her wits, the Omnitrix, and her girl - power (like determination and empathy) to defeat the villain and show that gender doesn't matter when it comes to being a hero.
Perhaps in this fanfic, Ben as a girl could have a different set of alien forms that are more attuned to her female identity. She might have an alien form that has unique powers related to femininity like the ability to heal or communicate with nature in a special way, which adds a new dimension to the story.
One idea could be that Ben Tennyson finds himself in a parallel dimension where the Omnitrix has transformed all the female characters into monster girls. He has to figure out how to change them back while also dealing with the new powers and personalities of these monster girls. Another plot could involve a group of evil forces trying to use the monster girl situation to take over the world, and Ben has to team up with some of the friendly monster girls to stop them.
A really interesting plot could involve a time - traveling aspect. Ben and Julie accidentally travel back in time to when Ben first got the Omnitrix. They have to be careful not to disrupt the timeline while also trying to find a way back to their own time. Along the way, they could meet younger versions of characters they know and have some really fun and emotional interactions. This could also lead to Ben learning some important lessons about his powers from his past self.
One idea could be Ben getting stranded on an alien planet full of strange and dangerous creatures. He has to use his alien forms in creative ways to survive and find a way back home.
Maybe a story where Ben teams up with some of his alien enemies against a greater threat in space. They could be in a situation where they have to fight a powerful cosmic entity that wants to destroy all known planets. Ben would have to convince his former foes that they need to work together by showing them the magnitude of the danger.
One idea could be Ben using his alien forms in a virtual reality gaming world. He could face off against digital versions of his enemies and have to use his unique alien abilities to progress through levels.
One idea could be exploring the origin of the Nemetrix in more depth. Maybe there was an ancient alien race that created it for a specific purpose, like hunting down the most dangerous predators in the galaxy. Another plot could involve a character getting accidentally bonded with the Nemetrix and having to deal with its unpredictable powers.
One idea could be Looma challenging Ben to a series of alien - based contests in her home planet. This would show off different Ben 10 aliens' abilities in a new and exciting setting.
A more character - driven plot could be about Ben trying to help an alien species that is being persecuted in the Omniverse. He uses his different alien forms to understand their culture and problems better. Along the way, he discovers that there are some dark secrets in the Omniverse's politics that are related to this species' situation. This would allow for a deeper exploration of the Omniverse's world - building and Ben's character growth.
Another plot could be that a new villain emerges who has the power to control both human and Myaxx technology. Ben and Myaxx must figure out a way to break this control and stop the villain from taking over the galaxy. They start by gathering intelligence on the villain's lair and formulating a plan that utilizes Ben's shape - shifting abilities and Myaxx's knowledge of her own technology.
A plot could involve a group of young Highbreed who are curious about Earth and its cultures, and they secretly befriend Ben. This would lead to a series of adventures where they have to hide their friendship from the more traditional and hostile Highbreed. They could learn a lot from each other, and Ben could teach them about the value of diversity and cooperation.