A possible plot is that Naruto is constantly bullied because of his neglected state and his unknown bloodline. As he grows, he starts to show signs of his bloodline powers, which attracts the attention of both friends and foes. His journey then becomes about controlling his powers and dealing with the past neglect of his parents while also facing the new challenges that come with his revealed bloodline.
One plot twist could be that Naruto discovers his parents had a very good reason for their neglect, like they were protecting him from a greater danger. Another could be that the village elders knew about the neglect but did nothing, and Naruto has to confront them. Or perhaps Naruto finds out he has a secret power that was the cause of his parents' seeming neglect, as they were afraid of what he could do.
The angel bloodline might be neglected in the fanfiction due to the lack of connection to the existing Naruto lore. In the Naruto world, there are already established power systems and lineages. If the angel bloodline is not carefully tied to these existing elements, it may be pushed to the side. Additionally, the writer might be saving it for a big reveal later in the story, so it appears neglected in the early parts.
In this type of fanfiction, Naruto could have a different attitude towards authority. As his parents are neglecting him, he might not have that natural respect for figures of power. He may question the village's system more. Also, his dreams of becoming Hokage could take on a new meaning. Instead of just seeking recognition, it could be a way for him to create a family - a village where no one is neglected like he was by his parents.
One possible story could be that Naruto discovers his unique bloodline abilities later in life and realizes that his parents' neglect was partly due to fearing his power. He then has to come to terms with this and learn to control his abilities on his own.
A possible plot could be that Naruto discovers that his parents' neglect is due to a secret they are keeping from him. They might be protecting him from a greater threat by staying away from him, but Naruto misinterprets it as neglect. As he digs deeper into the mystery, he uncovers the truth and has to decide whether to forgive his parents or not. This would add a lot of drama and emotional turmoil to the story.
One common plot point is Naruto's search for his identity. Since he's neglected by his parents, he has to figure out who he is on his own. And with the Mokuton aspect, it often involves uncovering a hidden family connection related to Mokuton. Another is his struggle to gain power. He's determined to become strong using Mokuton to prove that he can succeed without his parents' support.
Well, it could be about a sword that has some sort of hidden power. Maybe it was once used by a great shinobi in the Naruto world but has been forgotten over time. The story might follow a character who discovers the sword and tries to unlock its potential while everyone else in the Naruto universe is neglecting it.
Well, it could be about Samehada being overlooked in the Naruto universe. Maybe it's not being used to its full potential. For example, it might be that no one realizes its unique abilities aside from just being a weapon. Or perhaps it's being misused or underutilized by its owners.
Well, one possibility could be that Naruto is somehow transported to the Star Wars universe and is neglected by the Sith. Maybe they see him as a weakling at first. He then starts to learn their ways in secret and eventually uses his Naruto - like determination to rise above their neglect and become a powerful force against them.
In such a fanfiction, perhaps Naruto is in a new world where Rias, for some reason, completely ignores him. Maybe it could lead to Naruto feeling isolated and having to find his own way in this strange new place. He might start training alone and discover new powers out of his need to prove himself despite Rias's neglect.