It could be another powerful heartless that doesn't want the female heartless to change or form a bond with Sora. This heartless might see Sora as a threat to their dark world and the female heartless's loyalty to the heartless group.
Love against all odds is often a theme. Since Sora is a hero and the Heartless are typically seen as enemies, the idea of them falling in love goes against the norm. It creates a lot of drama and tension. There might also be themes of self - discovery for both Sora and the female Heartless character. As they interact, they learn more about themselves and their place in the Kingdom Hearts universe.
Well, perhaps the female heartless has been sent to corrupt Sora. However, Sora's pure heart starts to have an unexpected influence on her. Instead of corrupting him, she finds herself being drawn to his light. This creates an internal struggle within her as she has to decide between her heartless instincts and this newfound attraction to Sora.
In this type of fanfiction, the dynamic between Sora and the Heartless can be really interesting. Some fanfics might focus on the power struggle. Sora has his own set of powers, and the Heartless are known for their menacing nature. Their interaction could lead to some intense battles or unexpected alliances. It all depends on how the author wants to portray this relationship within the Kingdom Hearts universe.
Well, you can try searching on fanfiction websites like Archive of Our Own. There might be some interesting Sora x female Heartless stories there. However, I haven't specifically read any to recommend directly.
It could be a rogue ninja who wants to capture the female werewolf for her unique powers. He might see her as a tool to gain more power in the ninja world.
The theme of friendship or an unlikely bond is also prevalent. Despite the Heartless being the enemy, some fanfictions may depict Sora forming a connection with them. This can be a very interesting take as it goes against the normal perception of the relationship between Sora and the Heartless in the original game. It can also be a way to show Sora's capacity for compassion.
It could be a rogue scientist who was once part of the Gundam project. He has his own ideas about how the Gundam technology should be used and is willing to do anything to get his hands on it, even if it means going against Sonia and the Gundam's pilot.
It could be a powerful dark wizard from the Enchantress' world who follows her to the Naruto universe. He wants to capture the Enchantress and use her powers for his evil plans, and also sees the chakra in Naruto's world as a new source of power to conquer. He could have dark magic that can nullify ninjutsu, creating a real challenge for Naruto and the Enchantress.
It could be a rogue demon slayer who disagrees with Oyakata - sama's leadership and sees Tanjiro as a tool to undermine him. This character might be jealous of Tanjiro's closeness to Oyakata - sama.
Mephisto could also be a great main antagonist. His ability to corrupt and manipulate could pose a real threat to Naruto. Mephisto might try to turn Naruto's friends against him or corrupt Naruto himself. Since Naruto values his comrades highly, this would be a difficult situation for him to deal with. And if Mephisto manages to get into Naruto's head, it could lead to some really intense and dark moments in the fanfiction.