You could also write a fanfiction where a kikaichu is accidentally infused with some powerful chakra. This gives it unique abilities that no other kikaichu has. It then has to deal with the consequences of this new power, like being hunted by other creatures or being feared by the humans in the village. It could be a story of self - discovery and learning to control this new power for good.
Yes, in many Naruto fanfictions, there are scenarios where Naruto has Kikaichu. Fanfiction writers often like to play around with different concepts and abilities within the Naruto universe, and this is one such example.
He could gain new stealth abilities. Kikaichu are known for their ability to be discreet, so Naruto might be able to spy on enemies more effectively.
One interesting idea could be the combination of Naruto's ninja skills with mecha technology. For example, Naruto might use his chakra to power up the mecha in unique ways. Another idea could be the new enemies that are created specifically for this mecha - Naruto concept, like robotic shinobi that require different combat strategies compared to normal foes. Also, the design of the mecha Naruto itself can be really cool, perhaps with features inspired by the Nine - Tails.
Focus on unique character development. Instead of just having the kikaichu as a sidekick, give it a full personality with its own dreams and fears. For example, if it's a kikaichu that's afraid of water but has to overcome that fear to save its ninja partner in a flooded area.
Another idea is that Aizen somehow ends up in the Naruto universe during the time of the Fourth Great Ninja War. He could try to manipulate both sides for his own gain. But Naruto, with his ability to see the good in people, might try to reason with Aizen and show him a different path. It could be a story of redemption or a great battle if Aizen refuses.
In a 'Naruto Mermaid Fanfiction', the mermaids could be in danger from an evil organization that wants to capture them for their precious scales. Naruto teams up with a mermaid princess to stop this threat and in the process, they learn about each other's worlds.
One idea could be a crossover where Naruto and Pucca end up in the same world due to a strange ninja jutsu gone wrong. Naruto is confused by Pucca's constant chasing of Garu, and he tries to help Garu escape in his own Naruto - style way.
Well, you could write a fanfiction where the Nine - Tails in Naruto has some sort of connection to a powerful entity in the Seraphim universe. This connection could lead to a series of events that require Naruto and the Seraphim characters to work together. Or perhaps a character from Seraphim is reincarnated as a ninja in the Naruto world and has to adapt to the new way of life while still having some of their Seraphim abilities.
One idea could be a blacksmith who creates unique ninja tools with special abilities that give the wielder an edge in battle. For example, a kunai that can change its shape during flight to avoid enemy defenses.
You could also write a fanfiction about Naruto being raised by a different clan in the village. For example, if he was raised by the Uchiha clan, it would have a huge impact on his character development and relationships within the village.