What could be an interesting plot in a Harry Potter Omnitrix fanfiction?

Well, he could use it to transform into different alien species and gain their powers. For example, he could turn into a strong and durable alien like Four Arms and be better at fighting Death Eaters. It would definitely change the whole dynamic of the wizarding world as his abilities would be a combination of magic and alien powers.

One idea could be that Mewtwo somehow gets transported to the Harry Potter universe. It could be mistaken for a very powerful magical creature. Harry and his friends could initially be wary of it, but then realize it has no intention of harm and they team up to fight against the dark forces in the wizarding world using Mewtwo's psychic powers.

Another plot could be that Voldemort discovers Powergirl's existence and sees her as a threat. He tries to manipulate the wizarding world against her. But Harry and his friends believe in her and together they work to expose Voldemort's lies and also learn from Powergirl about different ways of fighting evil. Powergirl could introduce new concepts of justice and heroism to the wizarding world.

One possible plot could be that Harry discovers a hidden magical realm in the Pokémon world during one of his adventures. There, he meets Rayquaza. Rayquaza, being a powerful Pokémon, senses the strong magic within Harry. Together, they have to fight against a dark wizard who has found a way to corrupt Pokémon and use them for evil purposes in both the wizarding world and the Pokémon world.

Maybe the Timekeeper is actually a descendant of an ancient wizarding family who was tasked with keeping time in balance. In the fanfiction, Voldemort discovers this and tries to use the Timekeeper's powers to go back in time and prevent his own downfall. The Timekeeper has to fight against Voldemort's minions while also trying to find a way to protect the timelines. Harry and his friends get involved when they notice strange time - related disturbances around the school. They join forces with the Timekeeper to stop Voldemort's evil plan.

In a fanfiction, the Triforce could be split among Harry, Ron and Hermione. Harry gets the Triforce of Courage, Ron the Triforce of Power (which he learns to use in a more responsible way), and Hermione the Triforce of Wisdom. Together, they combine their powers of the Triforce with their magic skills to defeat Voldemort once and for all. The Triforce's power could also be used to reform the wizarding world, bringing more equality and peace.

Well, perhaps the magical creatures from the Harry Potter universe end up in the '300' setting. Dragons could be used by the Spartans to fight their enemies. The centaurs could also join the battle, lending their archery skills. And Harry could learn some combat skills from the Spartans, which he could then use back in the wizarding world to fight Voldemort's Death Eaters.

Perhaps in this 'Harry Potter in Vegas' fanfiction, Harry accidentally apparates to Vegas instead of his intended destination. There he meets a group of American wizards who are using Muggle Vegas as a cover for a secret magic convention. Harry gets involved in a mystery where a powerful magical artifact has gone missing and he has to find it before it falls into the wrong hands.

One possible plot could be that the Kubikiribocho, the sword in Naruto, somehow finds its way into the Harry Potter universe. Harry discovers it during one of his adventures in the Forbidden Forest. He initially has no idea how to use it but gradually realizes it has some unique powers that can be harnessed against Voldemort. For example, it might be able to cut through dark magic spells. However, there are also some negative aspects to the sword as it tries to corrupt Harry a bit, just like the influence of the Horcruxes. Harry has to fight against this internal battle while also using the sword's power to defeat Voldemort.

A possible plot is that Tigger, with his boundless energy, teams up with Harry Potter. Tigger's unique ability to bounce high and far could be useful in Quidditch. He might bounce on the brooms and make them go even faster, or he could bounce around the Quidditch pitch, distracting the opposing team. Meanwhile, Harry could teach Tigger about the wizarding world and its secrets.