A major reason could be differences in their approaches to fighting the dark forces. Maybe in the fanfic, Hermione wants to use a more diplomatic and academic approach, Ron is hesitant and just wants to follow the status quo, and Harry wants a more direct and action - based approach. Their inability to reconcile these differences can lead to Harry being angry. For example, when they are planning how to deal with a new dark wizard threat, their arguments and lack of compromise can make Harry frustrated and angry with them.
In some fanfictions, Harry might be angry with Ron and Hermione if he feels they are keeping secrets from him. For example, if they discover something important about Voldemort's plans but don't share it right away, Harry could get angry. He's used to relying on them and when that trust is broken, even if it's a misunderstanding, his anger can flare up.
Jealousy is a big one. Ron often feels like he's in Harry and Hermione's shadow. He might see their achievements and feel left out or unimportant, which could lead to his betrayal.
One common reason is Hermione's over - protectiveness. Sometimes she tries to control situations too much, which can make Harry feel suffocated and thus angry. For example, in some fanfictions, she might try to stop Harry from taking risks in a dangerous mission, which he sees as her not believing in his abilities.
Well, perhaps in the fanfiction, the Order made decisions without consulting Harry. They might have put him in a dangerous situation without his knowledge, like sending him on a mission that seemed suicidal. It could also be that they were keeping secrets from him that he felt were important to his fight against Voldemort.
In fanfiction, Harry Potter might be angry if his friends are in danger and no one seems to be taking it seriously. He's very protective of his friends, like Ron and Hermione. So if some authority figures in the story are being dismissive of the threats his friends face, that would surely make him angry.
It's possible that Harry hates it because he has a certain image of Ron and Hermione in his mind. Fanfiction can sometimes create versions of them that are completely different from what he knows. For example, some fanfiction might focus on a love triangle that he doesn't think exists in their real relationship. This divergence from his perception could lead to his dislike.
Power could be a reason. If there's a chance for Ron and Hermione to gain a great deal of power by turning against Harry, some fanfictions might explore this. For instance, a new dark power might offer them something they've always desired, like the ability to reform the wizarding world in their own image. They might think Harry would oppose this, so they betray him to get what they want.
One possible reason could be a misinterpretation of their relationships. Maybe the author wants to explore a different dynamic where Harry and Hermione bond over Ron's perceived flaws, like his occasional laziness or his insecurities that might come across as annoying to them in this fictional scenario.
Sometimes, the plotlines in fanfiction can be a bit outlandish. If Ron is constantly getting into trouble in a way that Hermione has to constantly clean up after him, it would be understandable for her to be fed up. This could be different from the more equal partnership they had in the original series.
One common reason is differences in their future plans. For example, in some fanfictions, Ron might want a simple life in the wizarding world while Hermione has grander ambitions that involve Muggle - wizard relations.