One possible reason could be a serious rule violation. For example, if Harry was wrongly accused of using dark magic within the Gryffindor common room. Another reason might be that he was framed for stealing the Gryffindor sword. It could also be due to a conflict with other Gryffindor students that got out of hand and the house decided they couldn't keep him anymore.
Well, in some fanfictions, it could be because of a prophecy that the Gryffindor house leaders misinterpreted. They might think that Harry's presence would bring great danger to the other students in Gryffindor. Or perhaps Harry's connection to Voldemort was seen as too much of a liability for the house. Say, if there were some dark magic related incidents and Harry was suspected because of his link to Voldemort, even if he was innocent.
One reason could be that he breaks a major school rule. For example, if he uses dark magic without proper authorization, the Gryffindor house might decide to expel him. Gryffindor values courage, but there are limits, and using dark magic goes against the values of the school as a whole.
One possible reason could be his unruly behavior. Naruto is known to be a bit of a troublemaker in the series, always pulling pranks. In fanfiction, this might be exaggerated, and the orphanage might not be able to handle it anymore. Another reason could be that he's suspected of being involved in something dangerous or illegal, even if he's innocent. For example, if there are strange incidents around the orphanage and Naruto is the easy target to blame because of his reputation.
One possible reason could be his prankster nature. Maybe he played one too many harmless but annoying pranks on the staff or other orphans, and they decided they'd had enough. Another reason might be the fear of the Nine - Tails within him. Even if the people in the orphanage didn't fully understand what it was, they could sense something dangerous about Naruto and wanted to distance themselves from him for safety reasons.
Maybe he was blamed for some trouble he didn't actually cause. For example, if something went missing in the orphanage and the caretakers wrongly thought Naruto took it.
In some fanfictions, if Harry is kicked out of Gryffindor, he might end up joining another house like Hufflepuff. The Hufflepuffs are known for their acceptance and might welcome Harry with open arms. This could lead to a whole new set of adventures for Harry, as he would have to adjust to the different values and culture of Hufflepuff house.
Another reason could be related to a new prophecy. Suppose a new prophecy emerged that said Harry Potter's presence in Gryffindor would bring great danger to the house. The Gryffindor students and faculty, believing in the importance of protecting the whole house, might have decided to banish him. But of course, this would be a very difficult decision as Harry has been an important part of Gryffindor before. And in the end, the prophecy might turn out to be misinterpreted.
Perhaps she was kicked out due to personal conflicts within the pack. If there were other members who didn't like her or were jealous of her for some reason, they might have spread false rumors or convinced the pack leaders to expel her. It could also be that she was in a relationship that the pack disapproved of, and as a result, they decided to kick her out.
Perhaps Percy was kicked out because of a prophecy that the camp elders misinterpreted. They thought that Percy's presence would bring great danger to the camp, so they made the hasty decision to expel him. It could also be that there was some sort of political intrigue within the camp. Some powerful figures at the camp might have seen Percy as a threat to their power and influence, and so they fabricated reasons to get him kicked out.
In some fanfictions, the author might create a situation where Harry's actions lead to great harm to Gryffindor as a whole. For instance, if he makes a decision that causes Gryffindor to lose a significant amount of points in a crucial time, like right before a major competition. This could lead to his censure as the house would see him as a liability. Also, if he gets into a feud with important Gryffindor figures, like the prefects or the head of the house, it could result in his censure.
One possible reason could be that she has different beliefs or values from her family. For example, if her family follows a very traditional path and she wants to pursue something more modern or unorthodox like a career in a non - traditional field that the family doesn't approve of.