A simple plot idea is that the Boggart - Voldemort becomes so powerful in its manifestation that it starts to physically interact with the real world. Harry has to figure out how to stop it before it causes real damage. Another idea is that the Boggart - Voldemort begins to target Harry's friends one by one, using their worst fears against them. Harry then has to find the strength to face his own Boggart - Voldemort to save his friends. Also, what if the Boggart - Voldemort was actually being controlled by a new, hidden enemy? Harry would have to uncover this mystery while also dealing with his fear of the Dark Lord.
One plot idea could be that Harry has to face the Boggart - his parents - in a more public setting than expected, like during a school-wide anti - dark arts demonstration. This could add an extra layer of pressure as he tries to keep his emotions in check. Another idea is that the Boggart - parents might start interacting with other students' Boggarts, creating a chaotic and emotional mess in the classroom. Maybe the Boggart - parents could also show signs of the dark magic that killed them, which would terrify Harry even more as he realizes how close he is to that danger.
One idea could be that Harry, as Voldemort's soulmate, tries to use their connection to redeem Voldemort. He might show Voldemort memories of love and kindness in an attempt to change his dark ways.
One plot idea could be that they discover they are mates due to a powerful magical bond. They then have to hide this fact from the wizarding world which is in the midst of a war. Harry might try to convince Voldemort to abandon his dark ways, using their newfound connection as a way to appeal to his better nature.
Harry could use his love for his friends and family. The power of love has been shown to be strong against Voldemort in the original series. So, when facing the Boggart - Voldemort, he could focus on the love he has for Hermione, Ron, and the rest of his friends, and this positive emotion could transform the Boggart into something less terrifying.
One idea could be that Harry discovers a new spell that can penetrate Voldemort's dark magic defenses and uses it to shoot him. Another could be that Harry teams up with some unexpected allies, like the house - elves, who help him get in a position to shoot Voldemort. Maybe Harry has to sacrifice something important, like his invisibility cloak, to gain the power needed to fire the shot that will defeat Voldemort.
One interesting plot idea could be that Harry discovers a new and ancient magic that gives him an unexpected edge in the duel. For example, he might find a spell that can temporarily freeze Voldemort's dark magic, allowing Harry to strike. Another could be that Harry has a vision during the duel that shows him the true source of Voldemort's power, and he uses this knowledge to target it directly. Maybe it's a hidden object or a bond with a dark entity that Harry manages to sever, weakening Voldemort.
One idea could be a story where Bellatrix has a moment of doubt about Voldemort's methods. Maybe she starts to see the destruction he's causing and has to decide whether to stay loyal or turn against him. And Harry Potter could somehow be involved in this internal struggle of hers, perhaps by showing her a different path through his own actions and values.
Maybe Harry absorbs Voldemort and then has to deal with the internal struggle of Voldemort's thoughts within his mind. He constantly battles Voldemort's voice, which tries to persuade him to use power in a wrong way. But Harry uses his own strong will and the love he has for his friends and family to overcome it.
One plot idea could be that the female Voldemort has a change of heart. Maybe she starts to see the error of Voldemort's ways after interacting with Harry Potter. She could start to secretly help Harry and his friends against the Death Eaters, which would create a lot of internal conflict within the Dark side.
One idea could be a fanfiction where Voldemort has a change of heart due to some ancient magic. Maybe he discovers a spell that shows him the true consequences of his actions and decides to work with Harry to fix the wizarding world instead of destroying it.