Another possibility is that an ancient evil that was sealed away long ago has been awakened by the emergence of Naruto's sword bloodline. This ancient evil, with its own dark powers, sees Naruto as a key to either its full resurrection or the destruction of the ninja world. It would send its minions to fight Naruto and try to manipulate him into using the bloodline in a way that benefits its evil plans.
Maybe it could be other ninja clans who are jealous of Naruto's newfound sword bloodline. They might see it as a threat to their own power and status in the ninja world.
It could be some dark forces that are interested in using the power of the sword bloodline for their own evil purposes. These antagonists could be powerful rogue ninjas or even an organization that wants to control the ninja world by harnessing the power of Naruto's bloodline. They would constantly try to either steal the bloodline or kill Naruto to prevent him from using it against them.
Perhaps there are dark forces from another dimension. These forces might be attracted to Naruto's power and want to either steal it or destroy him to prevent him from using it against them. They could be powerful demons or sorcerers with their own motives.
Another possibility is that the main antagonists could be the leaders of the other ninja villages. They might view Naruto's godlike and rogue status as a danger to the balance of power among the villages. So, they could form an alliance against Naruto, leading to a lot of political intrigue and conflict in the story.
Perhaps a dark entity from another dimension. This entity senses Naruto's powerful bloodline and wants to possess him or use his body as a vessel to enter the Naruto's world and wreak havoc. It would have otherworldly powers that Naruto has never faced before, making it a truly formidable antagonist.
The main antagonists could be members of an ancient clan who see Naruto's emerging powers from his bloodline as a threat to their own plans for power. They might fear that his newfound abilities will disrupt the balance of power they have been carefully cultivating for generations.
It could be his own family members who abandoned him. They might come back as antagonists, trying to stop Naruto from reaching his full potential or causing trouble for him out of envy or regret. Maybe they have joined a dark force and are now working against him.
In this fanfiction, the main antagonists might be a group of dark chakra - users. They are jealous of Naruto's godlike powers and want to take over the empire for their own evil purposes. They could be using dark magic to corrupt some of the people in the empire, turning them against Naruto. There might also be some power - hungry politicians within the empire who are not satisfied with Naruto's leadership and want to seize power for themselves. They would plot behind the scenes to bring down Naruto and take over the reins of the empire.
Well, in this fanfiction, the Akatsuki could be the main antagonists. They would view Naruto's godlike powers as a major threat to their goals. Since Naruto has been trained by Shendu, his abilities would be unpredictable and extremely powerful. They might band together to try and take Naruto down. Additionally, there could be some ancient demons or spirits that are awakened by Naruto's new powers and they see him as an intruder in their realm, so they become antagonists as well. They would use their own dark magic and powers to oppose Naruto.
The village elders could be the main antagonists. They might see Naruto's godlike powers as a threat to their traditional way of ruling the village and decide to get rid of him. Another option could be a secret organization within the village that wants to use Naruto's power for their own evil purposes and when he refuses, they turn on him.
One possible main antagonist could be a powerful being that controls the different dimensions and sees Naruto's hopping as a threat to his order. Another could be an evil version of Naruto from another dimension who wants to stop our Naruto from spreading his 'good' influence. Maybe a group of rogue dimension - travelers who are causing chaos in different dimensions and Naruto has to stop them.
It could be a powerful ninja from an ancient clan who sees the character with the godlike multi - bloodline as a threat to their own clan's supremacy. This antagonist would be very skilled in traditional ninja arts and would use their knowledge of the old ways to try and defeat the protagonist.