A possible plot is Molly Hooper being drawn into a world of dark magic while trying to solve a strange death at a historical site. It could involve her trying to figure out how the victim was involved with a secret occult group. Or, she could be targeted by a serial killer who has a fascination with her work in the morgue, and she has to use her wits to outsmart the killer. She might also find herself in a situation where she has to choose between her loyalty to Sherlock and her own safety in this dark fanfiction scenario.
In a dark Molly Hooper fanfiction, there could be a plot where she is wrongly accused of a crime she didn't commit. The real culprit is a powerful figure who wants to frame her to cover up their own misdeeds. As she tries to prove her innocence, she uncovers a web of corruption and lies in the medical and criminal justice systems. This could lead to her having to take matters into her own hands and use some unorthodox methods to clear her name, all while dealing with the emotional and physical toll of being the target of such a malicious plot.
One popular Molly Hooper fanfiction might be those that explore her relationship with Sherlock in more depth. For example, some stories could show her helping Sherlock solve cases from a different perspective, adding her own unique insights.
A mysterious detective from another city who has a different approach to solving crimes compared to Sherlock. This character could initially be at odds with Molly but later become an ally. Another could be a reclusive scientist who has some dark secrets related to the cases Molly is involved in. There might also be a street - smart informant who has connections in the underworld and provides Molly with valuable information, but at a price.
One common theme is the relationship between Molly and Sherlock evolving. Since Molly is pregnant, Sherlock might have to step up and be more protective or show more emotions. For instance, he could start to see Molly in a new light, not just as a friend or colleague in the morgue.
One common theme is unrequited love. Molly has strong feelings for Sherlock, and in many 'hurt' fanfictions, this unreciprocated love causes her emotional pain. For example, she might see Sherlock with other people and feel heartbroken.
One idea could be that they face challenges from the wizarding community who don't understand their relationship. Another could be them exploring new magical abilities together as a married couple. Maybe they could also go on adventures to discover ancient magic secrets that are related to their combined family lineages.
There are many out there. Some might focus on Molly Hooper being married to a character from the original series she's in. For example, if she were married to Sherlock in a fanfiction, it could show how their relationship evolved from friends to lovers and then spouses. It could also include how they handle cases together as a married couple, adding a new dynamic to the detective work.
One place to start looking could be Archive of Our Own (AO3). There are often a variety of fanfictions about Molly Hooper in different situations, including ones where she might be 'hurt' in an emotional or physical sense. You can search using the tags related to Molly Hooper and the specific themes of hurt you're interested in.
One common theme is the unspoken love between them. In many fanfictions, Sherlock is portrayed as having deeper feelings for Molly that he struggles to express. For example, in some stories, he might show his care for her in small, indirect ways like solving a case that's related to her in some way.
One possibility in this fanfiction could be that Sherlock initially struggles with the idea of having a baby. He's so used to his logical, detective - focused life. But Molly's nurturing nature helps him gradually come to terms with it. Maybe the baby inherits Sherlock's incredible observational skills and Molly's kind heart.
Perhaps a plot where Ash and Molly Hale get transported to an alternate dimension where the rules of the Pokemon world are different. In this dimension, Pokemon battles are more extreme and dangerous. They have to quickly adapt and find a way back home. They meet some strange characters in this dimension who either help or hinder their progress. Their friendship grows as they rely on each other to survive in this unfamiliar and often hostile environment.