Jiraiya's comfort gives Naruto the confidence to face his fears. For example, if Naruto was crying because he was afraid of a powerful enemy, Jiraiya's words of wisdom and support would make him more determined to train harder and find a way to defeat that enemy in the future.
Jiraiya's comfort can also make Naruto more empathetic. If Naruto was crying because of a misunderstanding with a friend, Jiraiya's calming presence and advice would make Naruto realize the importance of communication. In the future, Naruto would be more likely to reach out to others first, resolve conflicts amicably, and build stronger relationships because of this experience of being comforted by Jiraiya.
Jiraiya might comfort Naruto by sharing his own experiences. He could tell Naruto about the times he faced difficulties and how he overcame them. For example, he might talk about his training with the toads and how he grew stronger through perseverance.
It could be that Naruto has lost a dear friend. He is overwhelmed with grief. Jiraiya comes to his side. He doesn't say much at first but just gives Naruto a big hug. Then he starts to talk about the impermanence of life and how those who are gone would want Naruto to keep moving forward and be strong for their sake.
The training makes Naruto more confident in his abilities. Jiraiya constantly challenges Naruto and as Naruto overcomes these challenges, he realizes his own strength. He starts to believe in himself more, which is evident in the way he faces stronger opponents without hesitation later on. Also, Jiraiya's teachings about the ninja way and the importance of protecting those you love make Naruto more determined and focused on his goals.
The plot could be that Naruto is crying due to the pressure of being the Jinchuriki. Jiraiya comforts him by saying that his strength is not just in the Nine - Tails but in his own heart. He gives Naruto the fan as a reminder of their bond and that he'll always be there for him, even if not physically.
At first, Naruto might isolate himself. He doesn't want to be around others as he is so consumed by his grief. He just sits in his room or goes to a quiet place where he can cry alone and think about Jiraiya.
Jiraiya's training in the fanfiction might focus on Naruto's inner strength as well. He could help Naruto better understand and control the Nine - Tails' power. This new - found control would give Naruto a sense of calm and authority. His character would shift from being just a loud - mouthed underdog to a more respected and powerful ninja. Naruto would also learn about loyalty and sacrifice from Jiraiya, which would shape his values.
One common theme is mentorship. Jiraiya acts as a mentor to Naruto, guiding him not just in ninjutsu but also in life. Another theme is emotional healing. Naruto often has a lot of emotional baggage, and Jiraiya helps him work through it.
One possible reason could be that Naruto is feeling lonely. Despite having friends, he still has moments when the weight of his past, like being an orphan and ostracized in the village as a child, hits him hard. Jiraiya might see Naruto crying because of these memories resurfacing.
It can create a sense of growth for Naruto. Without Jiraiya by his side, he has to rely more on his own instincts and the skills he has already acquired. This can lead to new character development as he faces challenges alone.
Their relationship would be very strong. Jiraiya would see Naruto as not just a student, but also as a connection to Minato. He would be strict but also very affectionate. Naruto would look up to Jiraiya as a father figure, since he never really had one. They would share many adventures together, with Jiraiya teaching Naruto about life, love, and ninjutsu.