Well, the plot could involve Naruto reaching new levels of power under Scorpion's training. Maybe Scorpion teaches Naruto some unique and deadly jutsu that Naruto combines with his own skills. For example, Scorpion might show Naruto how to use puppet - related techniques in combat, which Naruto could then adapt to his shadow clone jutsu, creating an army of puppet - controlled clones.
In this fanfic, the plot could start with Scorpion seeing potential in Naruto. He decides to train Naruto, perhaps because he wants to see what Naruto can achieve. As Naruto is trained, he not only gains power but also a new perspective on combat. The story could then unfold with Naruto using his new skills to protect the Hidden Leaf Village from threats that are far beyond the capabilities of normal ninja. This would show how his training with Scorpion has made him 'godlike' and a more formidable ninja.
Naruto could learn stealth and assassination techniques. Scorpion is known for his sneaky and deadly attacks, so Naruto might pick up on how to move quietly and strike without warning.
The plot could involve Naruto learning Darkseid's powerful and dark techniques. Maybe he struggles with the morality of using such dark powers while also becoming extremely powerful. For example, he might use his newfound strength to protect Konoha in a way that scares his friends at first because of its intensity.
One possible plot twist could be that Naruto, despite being trained by Shisui and Itachi, struggles with the darker aspects of their teachings. For example, he might find it hard to adapt to their more stealthy and sometimes morally ambiguous tactics. Another twist could be that an enemy figures out Naruto's new training sources and uses it against him by setting traps based on the Uchiha's fighting styles. Also, Naruto could discover a hidden connection between the Uchiha clan and his own Uzumaki heritage during the training process that changes his perspective on his powers and destiny.
In this fanfic, perhaps Naruto's godlike powers would be a result of Danzo's unorthodox training methods. Danzo could push Naruto to his limits, making him a force to be reckoned with. Naruto might also have to deal with the distrust of his friends at first, as they are suspicious of his association with Danzo.
In this fanfic, perhaps Deadpool's training makes Naruto question his own beliefs and values. Naruto has always been about friendship and protecting the village, but Deadpool's chaotic nature might make him see things from a different perspective. As Naruto becomes more 'godlike', he has to balance his newfound power with his original ideals, and this internal struggle could be a major part of the story.
Well, perhaps Naruto, with his natural talent, is taken under Merlin's wing. Merlin could teach Naruto some really powerful magic or unique combat strategies. Maybe Naruto becomes even more powerful than in the original series and uses his new skills to protect his village in ways no one expected.
One aspect of the plot could be Naruto's struggle to control the new power. The Godlike Sharingan is a powerful and potentially dangerous ability. Naruto might initially have a hard time adjusting to seeing the world through the Sharingan's perspective. Itachi would then have to guide him through this process. Also, they could face enemies who are after the power of the Godlike Sharingan that Naruto now has, leading to intense battles where Naruto has to use his new skills and the knowledge Itachi has imparted to him.
One possible plot twist could be that Naruto, while being trained by Madara, discovers a hidden agenda. Madara might be using Naruto to gain access to some powerful jutsu or artifact. For example, he could be after the Nine - Tails' power within Naruto in a more devious way than initially thought. Another twist could be that Naruto's new godlike abilities attract the attention of other powerful and malevolent forces from different dimensions, forcing him to fight battles he wasn't prepared for. And perhaps, during the training, Naruto uncovers secrets about the Uchiha clan that Madara has been hiding, which changes his perception of the whole situation.
Well, it could be really exciting. Naruto with his godlike powers, perhaps enhanced versions of his Rasengan and Shadow Clone Jutsu, trained by Deathstroke's brutal and strategic methods. Deathstroke might teach Naruto some new combat tactics and ways to be more stealthy. Naruto could also introduce Deathstroke to the world of chakra, leading to some really unique fight scenes and power-ups for both characters.
A plot twist could be that Urahara's training makes Naruto lose his ability to use shadow clones for a while. This forces Naruto to rely on other skills he's learned from Urahara, like swordsmanship or some new type of jutsu. It would also make his friends and enemies question his power and how to deal with this new Naruto.