It could also be a case of mistaken identity. The kidnappers might have been targeting someone else but ended up kidnapping Himawari by mistake. They then might try to figure out what to do with her, or they could still try to use her as leverage thinking she is the person they originally intended to kidnap.
One possible motive could be ransom. If Himawari is from a well - off family, the kidnappers might be after a large sum of money. Another motive could be revenge against someone close to Himawari, like her parents. Maybe they have some sort of vendetta and think kidnapping her will be a way to get back at them.
Another motive could be related to Kirishima's unique quirk. Maybe the kidnappers are interested in studying or stealing his hardening quirk for their own malicious purposes. They could be part of an illegal quirk - trading organization or some sort of mad scientist's group.
One possible motive could be to use Hermione as a bargaining chip against Harry Potter. Since Hermione is his close friend, the kidnappers might think they can force Harry to do something, like give up a powerful magical item or valuable information.
One possible motive could be to gain power. Since Goten is a Saiyan, his power could be harnessed in some way. For example, they might want to extract his ki or use his DNA for some evil experiment.
One possible motive could be to gain power. Natsu is a Dragon Slayer, and his magic is very powerful. The kidnappers might want to extract his magic or use him as a weapon. Another motive could be for revenge. Maybe Natsu has unknowingly wronged someone in the past, and they are out for vengeance. Or perhaps they are working for a greater evil, and Natsu is seen as a threat to their plans, so they want to get rid of him by kidnapping him.
One possible motive could be power. The kidnappers might think that by having Princess Peach, they can control the Mushroom Kingdom. Since she is the ruler, her capture could give the kidnappers leverage to make demands on the kingdom's resources or governance.
One possible motive could be power. If Naruto has some unique abilities or is a key to something powerful in the fanfic world, the kidnappers might want to control him to gain that power for themselves.
One possible motive could be money. The Stark family is wealthy, so the kidnappers might be after a large ransom. They could think that by holding Peter captive, they can force Tony Stark to pay up a huge sum.
The kidnappers could be motivated by jealousy. They might see Kuroko's skills and his importance to Seirin and want to take him out of the picture so their own team can have an advantage. For example, a rival team that has been losing to Seirin might think that without Kuroko, Seirin will be easier to defeat.
One possible kidnapper could be a rival engineer who is jealous of MacGyver's fame and ability to solve problems so effortlessly. This person might think that by kidnapping MacGyver, he can steal his ideas and take credit for his inventions. Also, it could be a group of eco - terrorists who believe MacGyver's work has been harmful to the environment in some way and want to force him to make amends by using his skills for their cause. A third option is a deranged fan who has an unhealthy obsession with MacGyver and wants to keep him all to himself, thinking that kidnapping is the only way to have MacGyver's undivided attention.
Perhaps a dark guild that has been observing Fairy Tail for a long time. They see Mirajane as a valuable asset and believe that her powers can help them in their evil plans. So they plot to kidnap her and force her to cooperate.