One idea could be a story where Bellatrix has a moment of doubt about Voldemort's methods. Maybe she starts to see the destruction he's causing and has to decide whether to stay loyal or turn against him. And Harry Potter could somehow be involved in this internal struggle of hers, perhaps by showing her a different path through his own actions and values.
One plot idea could be Harry growing up in a very different environment. Instead of the Dursleys, he's raised in the dark wizarding world under the influence of Bellatrix and Voldemort. He might struggle with his identity, having the blood of both a hero (in a way, as he's related to Harry Potter in the original story) and two of the darkest wizards. He could be trained in dark magic from a young age but have an inner conflict due to some latent goodness in him.
One idea could be a time - travel plot where Hermione somehow gets sent back in time and has to deal with a younger Bellatrix. Maybe she tries to change Bellatrix's path to the dark side. Another could be a magical duel between Hermione and Bellatrix where Harry is caught in the middle, forced to choose which side to help. Or a plot where Bellatrix, under some sort of spell, has to team up with Hermione and Harry to fight a greater evil.
One idea could be that Harry discovers a new spell that can penetrate Voldemort's dark magic defenses and uses it to shoot him. Another could be that Harry teams up with some unexpected allies, like the house - elves, who help him get in a position to shoot Voldemort. Maybe Harry has to sacrifice something important, like his invisibility cloak, to gain the power needed to fire the shot that will defeat Voldemort.
One interesting plot idea could be that Harry discovers a new and ancient magic that gives him an unexpected edge in the duel. For example, he might find a spell that can temporarily freeze Voldemort's dark magic, allowing Harry to strike. Another could be that Harry has a vision during the duel that shows him the true source of Voldemort's power, and he uses this knowledge to target it directly. Maybe it's a hidden object or a bond with a dark entity that Harry manages to sever, weakening Voldemort.
Maybe Harry absorbs Voldemort and then has to deal with the internal struggle of Voldemort's thoughts within his mind. He constantly battles Voldemort's voice, which tries to persuade him to use power in a wrong way. But Harry uses his own strong will and the love he has for his friends and family to overcome it.
One plot idea could be that the female Voldemort has a change of heart. Maybe she starts to see the error of Voldemort's ways after interacting with Harry Potter. She could start to secretly help Harry and his friends against the Death Eaters, which would create a lot of internal conflict within the Dark side.
One idea could be exploring Bellatrix's backstory before she became a Death Eater. Maybe she had a complex relationship with her family that led her down the dark path. Another could be a story where she has a change of heart, perhaps due to an unexpected encounter with a character like Harry Potter. For example, she could see some of her own past self in Harry and start to question her loyalty to Voldemort.
A really interesting plot could be Bellatrix being given a chance at redemption. In this fanfiction, she could start to question Voldemort's motives after seeing the destruction he causes. She might then try to secretly help the Order of the Phoenix. Also, a plot about her teaching a young Death Eater the ways of the Dark Arts and having second thoughts about it mid - way through could be fascinating.
One idea could be a time - travel plot where Harry somehow travels back in time and has to interact with Bellatrix in her younger days. This could lead to him trying to change her path before she becomes a Death Eater.
Some fanfics explore Bellatrix's family relationships more deeply. Like her relationship with Narcissa. There could be a plot where Bellatrix has to choose between loyalty to Voldemort and protecting her sister, which adds a lot of emotional depth.